PDB | 8ddx TRPM3 ion channel
cryo-EM structure of TRPM3 ion channel in complex with Gbg in the presence of PIP2, tethered by ALFA-nanobody
Original publication
copyrightData provided by Research Collaboration for Structural Biology, Zhao, C., MacKinnon, R. , provided free of copyright via the Protein DataBank. View original data or read license terms.
Simulation 8ddx_default_dppc
Images
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Distortions
Distortions show the average surface formed by lipid phosphate beads over the final 800 ns of simulation time. Red indicates a thinning of the bilayer (compared to bulk thickness), whilst blue indicates thickening.
Lipids
Coarse-grained lipids are shown with glycerol beads in yellow, phosphate beads in red and choline beads in blue. Atomistic lipids are coloured according to the CPK standard.
Contacts
Contacts show the average occupancy of the selected group within 6 Å of the protein over the final 800 ns of simulation time. Use the buttons below to select a representation.
Data Download
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Snapshots
8ddx_default_dppc-ready.pdb
Starting structure used for simulations.
8ddx_default_dppc-atomistic.pdb
Atomistic snapshot created with CG2AT.
8ddx_default_dppc-coarsegrained.pdb
Coarse-grained snapshot (MARTINI representation).
8ddx_default_dppc-distortions.pdb
Distortions (membrane surface representation) in PDB format.
Structures with contacts
8ddx_default_dppc-head-contacts.pdb
Atomistic structure with headgroup contacts as temperature factors.
8ddx_default_dppc-tail-contacts.pdb
Atomistic structure with acyl tail contacts as temperature factors.
8ddx_default_dppc-solvent-contacts.pdb
Atomistic structure with solvent contacts as temperature factors.
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8ddx_default_dppc.mpmd.finalframe.atomistic.pdb
17 MB, PDB Format
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Polypeptide chains
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